CIBC:Seg3D:Downloads

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These binaries are here merely for historical purposes. Please use the latest version.

Downloads

Seg3D 1.9.4 is the fourth in the 1.9 bugfix series. This release is primarily a fix for broken session files that people were encountering after flipping a volume. It also features a new measurement tool for determining distances within the volume, automatic resizing of huge volume renderings to preserve interactive performance, and a set of smart livewire-like speed function based contouring tools.

New features in 1.9.4

  • 304 Spacebar toggles volume visibility.
  • 306 Add Measurement Tool
  • 307 Draw mode preferences
  • 308 Index Space Cursor Information
  • 309 Interactive Huge Volume Rendering
  • 310 Intensity Correction filter
  • 312 Add Smart Polylines/Livewire/Speed Function tools

Major bugs fixed in 1.9.4

  • 305 Flip tool breaks sessions
  • 311 Better Volume Information GUI

Note: The new Intensity Correction Filter crashes under windows and is not available on that platform in this release.

Download Seg3D Ver 1.9.4


Seg3D 1.9.3 is the third in the 1.9 bugfix series. In addition Seg3D now features undo capability for tools and filters. There is a new layer information tool to give some statistics about the current layer such as size and number of labels marked. The polyline tool features an erase button and a few new logical operator volume filters have been added.

New features in 1.9.3

  • 61 Undo
  • 165 Add Layer Information Tool
  • 292 Polyline tool erase
  • 293 More logical operator filters
  • 302 Add new hotkeys

Major bugs fixed in 1.9.3

  • 235 Save always uses default filename
  • 287 Fix layer hotkey handling
  • 288 Threshold tool and slices out of sync
  • 289 Cannot read some images
  • 290 Fast tool deadlock on linux
  • 291 Remember seed points
  • 294 Mask Data results in grey masked area.
  • 295 Label cropping is broken
  • 296 Confidence connected filter multiplier should be float
  • 297 Remove redundant ITK Threshold Filter
  • 298 Dilate->Erode doesn't do anything
  • 299 Logical operations on mismatched label sizes causes crash
  • 300 Slow layer drawing on windows laptops
  • 301 Polyline tool speckling

Download Seg3D Ver 1.9.3


Seg3D 1.9.2 is the second in the 1.9 bugfix series. In addition to the bugs fixed there is a new interactive thresholding tool, a new move/scale tool, and some other minor additions with details listed as follows.

New features in 1.9.2

  • 271 Seed points in 3D scene
  • 272 Menu entries for moving layers up/down
  • 274 New Interactive Threshold Tool
  • 276 Brightness/Contrast on top visible layer
  • 280 New Move/Scale Tool

Major bugs fixed in 1.9.2

  • 254 Segmentation Export order is inverted
  • 270 Intel graphics volume crash
  • 273 Better 2D slice texturing
  • 275 Thread safe ThrowSkinnerSignal function on windows
  • 277 Polyline Tool fixes
  • 278 Mask the seed points in the Neighborhood Connected Image Filter
  • 279 Binary Dilate/Erode sometimes broken again
  • 281 InsightToolkit 3.6.0 IO fixes

Download Seg3D Ver 1.9.2

Seg3D 1.9.1 is primarily a bug fix version. Additionally there is a new Polyline tool, slice copying hotkeys, and layer move operations.

New features in 1.9.1

  • 255 Isosurface single labels
  • 258 Layer move functions
  • 259 Slice copying hotkeys
  • 260 Better seed point editing
  • 262 Connect up smart histogram equalization options
  • 263 Add basic Polyline Tool
  • 269 Reconnect ITKThresholdSegmentationLevelsetFilter

Major bugs fixed in 1.9.1

  • 241 Fill holes does not work properly
  • 244 Painting with large brush fails if center outside image
  • 243 Erode Dilate Filter is not working
  • 256 Dicom reader/writer fixes
  • 257 glIsTexture crash again, add texture deletion manager
  • 261 Seed point crash
  • 264 Split the Edit menu into Edit and Tools
  • 265 Load session OSX crash
  • 266 Logical or crash on OSX
  • 267 Session reader fails poorly
  • 268 ITKConfidenceConnectedImageFilter fails if there is another label

Download Seg3D Ver 1.9.1


The Seg3D 1.9 series features a reworking of the tool and filter GUI. It also uses unsigned character based labels with more efficient memory packing, many IO improvements, a more general label mask implementation, and many bug fixes.

New features in 1.9.0

  • 255 Isosurface single labels
  • 258 Layer move functions
  • 259 Slice copying hotkeys
  • 260 Better seed point editing
  • 262 Connect up smart histogram equalization options
  • 263 Add basic Polyline Tool
  • 269 Reconnect ITKThresholdSegmentationLevelsetFilter

Major bugs fixed in 1.9.0

  • 241 Fill holes does not work properly
  • 244 Painting with large brush fails if center outside image
  • 243 Erode Dilate Filter is not working
  • 256 Dicom reader/writer fixes
  • 257 glIsTexture crash again, add texture deletion manager
  • 261 Seed point crash
  • 264 Split the Edit menu into Edit and Tools
  • 265 Load session OSX crash
  • 266 Logical or crash on OSX
  • 267 Session reader fails poorly
  • 268 ITKConfidenceConnectedImageFilter fails if there is another label

Download Seg3D Ver 1.9.0


Seg3D 1.8.2 is primarily a bug fix release. Important new features are the display of the label color in the volumes list, image sequence reading and writing support for a number of image formats, and significant brush rendering improvements.

Major Changes in 1.8.2

  • 59 Display the label color
  • 94 Image Sequence Writing
  • 172 Image Sequence Reading
  • 175 SliceWindow: Use shader for segmentation display
  • 200 OpenGL glIsTexture crash when brushing
  • 206 Isosurface crash
  • 217 VFF output support
  • 220 Never overwrite files when writing session
  • 221 Crop tool breaks 3D View
  • 222 Remove bogus volume rendering options
  • 223 VFF Reader endianness check wrong
  • 224 Flip tool doesn't appear to work
  • 225 Use regular 3D view when volume rendering

Download Seg3D Ver 1.8.2 - November 13, 2007

Major Changes in 1.8.1

  • 118 Painting on invisible layer
  • 171 Add a VFF reader
  • 187 Visibility button crash
  • 203 Paint brush in color of selected layer
  • 207 Non-masking brush option
  • 208 Output compressed NRRDs
  • 209 Add Tools->Reset Brightness/Contrast
  • 210 Reenable saving of Matlab volumes
  • 211 Change brightness/contrast controls
  • 212 Fix paint window switching
  • 213 Brightness/contrast tool stuck
  • 214 Make black opaque
  • 215 New HistoEq filter
  • 216 New DataMaskFilter filter

Download Seg3D Ver 1.8.1 - October 25, 2007

Major Changes in 1.8.1

  • 154 Crop tool visibility bug
  • 155 File browser remembers where it is
  • 156 Non-alpha-numeric keys not working
  • 157 Change arrow key functionality
  • 158 Window redraw bug
  • 159 Faster volume rendering setup

Download Seg3D Ver 1.8 - September 26, 2007

Major Changes since 1.8rc2

  • 131 Basic Windows Installer
  • 133 New Icons
  • 146 Added a basic resample filter
  • 147 Volume rendering lockup with recent nvidia drivers
  • 148 OpenGL thread requires a large stack size


Prerelease 1.8rc1 is available. This release features many bug fixes and volume rendering improvements.

Major Bugs Fixed

  • 46 Layer should be changed to Volume
  • 69 wx Quit Dialog
  • 74 Merge trunk
  • 82 Save Layer fails without extension
  • 89 Volume rendering stays even after deleting layer.
  • 90 Unsupported Volume Rendering crash
  • 96 Volume rendering setup is slow
  • 119 Enable volume rendering in volume rendering mode.
  • 121 GM/Otsu filters display incorrect current layer
  • 122 Otsu confused about what it creates
  • 123 OpenGL viewer redraw problems on SUSE (64 bit)
  • 134 Sort images read by filename/number
  • 136 Volume rendering gradient max value is incorrect
  • 137 Stuck contrast tool
  • 141 Crop tool doesn't work, crash bug

New Features

  • 97 Choosing volume rendered layer
  • 114 FEATURE: selector between brush size and slice depth
  • 124 Hole Filling Filter
  • 125 Reparent Layers
  • 146 Added a basic resample filter

Version 1.7 is available. This is the first release transitioning the GUI to wxWidgets for a native look and feel on the various platforms. It also contains many bug fixes including the following:

  • 12 File Browser doesn't work
  • 22 Quit dialog comes up below Load Layer dialog
  • 47 Menu Item Cleanup
  • 54 Layer Type/Tool Type failure feedback
  • 55 Splash oddities
  • 58 Default application colors not super
  • 62 hangs during paint operation
  • 64 pop from an empty deque
  • 73 Isosurface Color
  • 75 New Menu Bar
  • 78 Brush cursor disappears when erasing
  • 79 Flip operators
  • 80 wxwidgets blank screen startup on OSX
  • 81 Tool leak
  • 83 Load session fails in wx

In addition the following issues with 1.7rc1 are fixed in the 1.7 release.

  • The Otsu filter was broken.
  • The Anisotropic Diffusion Filter was broken.
  • Mouse wheel handling was broken.
  • One button mouse handling on OSX.
  • The tar.gz files were incorrectly re-compressed by our web server.

Download Seg3D Ver 1.7 - August 8, 2007


Release v1.6 is available. This features numerous bug fixes, improvements to the Capecchi collaboration work flow, and volume rendering support.

Download Seg3D Ver 1.6 - June 29, 2007

Download Seg3D Ver 1.4 - March 21, 2007

Download Seg3D Ver 1.3 - February 26, 2007

Download Seg3D Ver 1.2 - February 14, 2007

Download Seg3D Ver 1.1 - February 6, 2007

Download Seg3D Ver 1.0 - January 16, 2007

  • Release 0.94 Beta - 13:45, 20 Nov 2006 (MST)
  • Release 0.93 Beta - 13:45, 20 Nov 2006 (MST)
  • Release 0.92 Beta - 17:13, 6 Nov 2006 (MST)
  • Release 0.91 Beta - 10:39, 1 Nov 2006 (MST)
  • Release 0.91 Beta - 10:39, 1 Nov 2006 (MST)
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